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Bug #4203 (Active): Creator in image upload template does not attach to images

Scratchpads issue queue - Mon, 2014-07-21 23:24

This one concerns the Creator column in the file_importer_image template, which I had succeeded in using previously but now can't get to work. Creator names (text strings) attached successfully to image files on Nemertea.myspecies.info (upload template attached) but subsequent uploads to Peracarida.myspecies.info and EOLhotlist.myspecies.info (templates also attached) left the creator field blank.

Bug #4202 (Active): Problem in nomencalture block...

Scratchpads issue queue - Mon, 2014-07-21 16:57

Dear Team,

One visitor of my site told me that some taxa have a wrong nomemclature block displayed when visiting the site. For example, she see that for the genus Schlettereriella, the nomenclature block is this from the genus Stephanospathius. Idem for the following genera:

- Genus: Acanthodoryctes Turner, 1918
- Genus: Bohartiellus Marsh, 1983
- Genus: Mimipodoryctes Belokobylskij, 2000
- Genus: Termitobracon Brues, 1923
- Genus: Eodendrus Belokobylskij, 1998
- Genus: Parana Nixon, 1943

That is wrong...
I have checked the taxonomy and the description in the taxonomy terms and all are correct.
Moreover after this checking all the genera on the site displayed the nomemclature infos corresponding the genus Schlettereriella rather than their own informations! :-/
And is I reload the site, and check various genera, it is the nomaclature infos from the genus Acanthodoryctes that appears...
May be a problem to refresh the block with new data when changing the selected taxa?

That is very strange.
Please could you fix and check why this happens now?
All was correct few days ago.

Thank you for your help.

Bug #4200 (Active): EOL DwC-A export- some soundfiles recognized as images

Scratchpads issue queue - Fri, 2014-07-18 16:51

Sound files in this resource are in mp3. (Sound files on another Scratchpad, in .wav format, don't have this problem.)

Records in the "image" file of the DwC-A for these sound files are assigned the correct mime format (audio/mpeg) but not the correct mime type; they are http://purl.org/dc/dcmitype/StillImage instead of http://purl.org/dc/dcmitype/Sound. The files are then not recognized or playable on EOL.

Bug #4199 (Active): Taxonomic name filters in literature tab are all doubled- ghost taxa?

Scratchpads issue queue - Thu, 2014-07-17 20:01

I have one biblio record with two taxa attached as keywords, which successfully indexed to taxa on the scratchpad. Both taxa and their parent taxa appear as filters in the literature tab, but each taxon name appears twice. I did once have two classifications coexisting on this Scratchpad, in two different taxonomies, when I updated the classification. I deleted one of them, so now one classification remains. I wonder if that is the source of the repeated names. The "im_field_taxonomic_name" values seem to differ for the two names in each pair.

Bug #4198 (Active): duplicate GUIDS in sounds.myspecies.info

Scratchpads issue queue - Thu, 2014-07-17 15:42

Following items have duplicate GUIDs - can you fix them please.

"1c773955-f84b-4c1e-b55d-c368497c1600","Uromenus brevicollis","","Species","","","http://sounds.myspecies.info/node/
"1c773955-f84b-4c1e-b55d-c368497c1600","Uromenus elegans","","Species","","","http://sounds.myspecies.info/node/

"2f147bd1-35b3-4958-ae5d-9156198b67a4","Psorodonotus illyricus macedonicus","","Subspecies","","","http://sounds.myspecies.info/node/

"2f147bd1-35b3-4958-ae5d-9156198b67a4","Psorodonotus illyricus","","Species","","","http://sounds.myspecies.info/node/


"3beace99-900e-4e0c-aa33-ce369531d605","Cicadetta argentata","","Species","","","http://sounds.myspecies.info/node/

"3beace99-900e-4e0c-aa33-ce369531d605","Cicadetta sp.","","Species","","","http://sounds.myspecies.info/node/


"3d8bfdb1-2dc3-491c-823e-9c0cdec8534a","Arcyptera labiata","","Species","","","http://sounds.myspecies.info/node/

"3d8bfdb1-2dc3-491c-823e-9c0cdec8534a","Arcyptera tornosi","","Species","","","http://sounds.myspecies.info/node/


"62c53016-0bd6-42b6-988a-b7fbf8ec414d","Rhacocleis edentata","","Species","","","http://sounds.myspecies.info/node/

"62c53016-0bd6-42b6-988a-b7fbf8ec414d","Rhacocleis ferdinandi","","Species","","","http://sounds.myspecies.info/node/

"62c53016-0bd6-42b6-988a-b7fbf8ec414d","Rhacocleis neglecta","","Species","","","http://sounds.myspecies.info/node/


"9ad44208-296b-436f-a718-7f203561e098","Poecilimon joncus lobulatus","","Subspecies","","","http://sounds.myspecies.info/node/

"9ad44208-296b-436f-a718-7f203561e098","Poecilimon jonicus lobulatus","","Subspecies","","","http://sounds.myspecies.info/node/


"f456da85-f02e-4f98-a7a1-6c5576e58690","Paradrymadusa aksirayi","","Species","","","http://sounds.myspecies.info/node/

"f456da85-f02e-4f98-a7a1-6c5576e58690","Paradrymadusa sordida","","Species","","","http://sounds.myspecies.info/node/


Bug #4197 (Active): Sratchpad very slow

Scratchpads issue queue - Wed, 2014-07-16 18:04

My Scratchpads are very slow at displaying pages. This is frustrating for users and for me when I am trying to create or edit pages. I guess this is a server issue which might not be too easy to resolve quickly?

Bug #4196 (Active): Highlighting text

Scratchpads issue queue - Wed, 2014-07-16 18:02

I find it tricky to highlight text precisely (using right click and move cursor over text) in the new Scratchpad system. The old interface was not problematic. It is difficult enough to highlight if you move across text from left to right, but moving from right to left often causes unwanted text to also be highlighted.

Bug #4195 (Active): limitation of characters in Biblio/Taxon

Scratchpads issue queue - Tue, 2014-07-15 08:29

I wanted to add all taxon names included in a publication. Unfortunately, I reached the limit of characters allowed in the "Taxon" field. Is it possible to allow unlimited characters in that field so that as many taxa as wished can be associated with a certain publication?

Bug #4194 (Active): Cannot attach *.gz files

Scratchpads issue queue - Sat, 2014-07-12 06:27

If possible, please add gzip (*.gz) files to the allowable formats for attachments. I notice that *.zip files are allowed. Adding *.gz will accomodate those of us using Linix.

Thanks in advance for your help.

- Aubrey

Bug #4193 (Active): Update to e-Monocot profile

Scratchpads issue queue - Thu, 2014-07-10 17:12

Dear Scratchpadders,

Please can you change 'The genus Maesa' Scratchpad to an e-Monocot profile.

Thanks very much,
Timothy Utteridge

Bug #4192 (Active): I need to be able to import a classification using the excel template

Scratchpads issue queue - Thu, 2014-07-10 12:55

I was unable to import a classification using the excel template method. The error message I got was:

SQLSTATE23000: Integrity constraint violation: 1062 Duplicate entry '0' for key 'revision_id'
SQLSTATE23000: Integrity constraint violation: 1062 Duplicate entry '0' for key 'revision_id'
SQLSTATE23000: Integrity constraint violation: 1062 Duplicate entry '0' for key 'revision_id'

The file I tried to import is on the scratchpad: http://maesa.myspecies.info/system/files/feeds/ow2_taxonomy_importer_maesa_xls.xls

I was not able to add a name manually anymore either.

Please advise.

Bug #4191 (Active): Ordering of Taxons

Scratchpads issue queue - Thu, 2014-07-10 06:17

After saving edits to a Taxon term I notice that it inserts the term at the top of the Genus list rather than leaving it in alphabetical order.
Also, when adding a Taxon to the system it adds the new species at the top of the list for the Genus, rather than putting them in alphabetical order.

Bug #4190 (Active): Lack of reference details on Nomenclature block

Scratchpads issue queue - Thu, 2014-07-10 03:25

Is it possible to have the actual title to the description reference displayed in the Nomenclature block immediately above where it shows the Page Number?

Bug #4189 (Active): Impossible to remove unwanted taxon name tags

Scratchpads issue queue - Wed, 2014-07-09 22:25

If a biblio record is tagged accidentally it is impossible to remove unwanted taxonomic name - the field is empty.

Bug #4188 (Active): WoRMS import- using old, incomplete WoRMS export file?

Scratchpads issue queue - Wed, 2014-07-09 21:42

There are a couple of issues that suggest to me that the WoRMS import into Scratchpads may be relying on an old resource file format, possibly the xml WoRMS originally created for EOL. Issue 4187 might also be related to this. WoRMS has a new DwC-A export available now which may serve better. Bart over at WoRMS should be able to direct you to the file if you'd care to upgrade ( or )

incertae sedis names appear without their incertae sedis suffix it ends up in the Author field. I'm not sure if the new resource file will fix that, but it does keep the incertae sedis in the same field with the taxon name. (eg, manually corrected already, http://nemertea.myspecies.info/classification/nemertea-incertae-sedis used to read simply "Nemertea" in the classification browser.)

-intermediate ranks at higher levels are missing from the import (eg: subclass). These are present in the new WoRMS export file.

Bug #4187 (Active): Subgenus names brought in from WoRMS- Subgenus epithet goes into Authority field

Scratchpads issue queue - Wed, 2014-07-09 21:28

This problem may be specific to the WoRMS classification import. Subgenera are placed as unranked children under their genus, with the same name as the genus, and the subgenus name goes into the Authors field, see reference tab, http://echinoderms.myspecies.info/taxonomy/term/5999#overlay=admin/structure/taxonomy/echinodermata//5999%3Fdestination%3Dtaxonomy/term/5999

Bug #4186 (Active): Export to EOL, gives credit to uploader & Scratchpad name instead of Creator

Scratchpads issue queue - Wed, 2014-07-09 20:24

I'm sorry! I thought we'd straightened all this out, but now that we have some Scratchpads with Creators differing from uploaders and scratchpad owners, it's showing up. Here's the layout:

In this extension:
<extension encoding="UTF-8" linesTerminatedBy="\r\n" fieldsTerminatedBy="," fieldsEnclosedBy=""" ignoreHeaderLines="0" rowType="http://eol.org/schema/media/Document">

this element:
<field index="6" term="http://eol.org/schema/agent/agentID"/>

currently codes for the user who uploaded the image, whose details are given in the agents extension. The person designated here should be from the Creator field in the image metadata. (Note that if preferable, it's not necessary to use the agents extension at all; there are several terms that can be used right in the image extension, inserting the relevant name(s) as text.)

The situation is somewhat similar for Taxon Descriptions. In this extension:
<extension encoding="UTF-8" linesTerminatedBy="\r\n" fieldsTerminatedBy="," fieldsEnclosedBy=""" ignoreHeaderLines="0" rowType="http://eol.org/schema/media/Document">

in these elements:
<field index="6" term="http://ns.adobe.com/xap/1.0/rights/Owner"/>
<field index="11" term="http://eol.org/schema/agent/agentID"/>

are currently the name of the Scratchpad, as a text string, and a code for the uploader, respectively. The name of the Scratchpad is not really necessary; this is displayed on EOL anyway via the content partner account, and doesn't need to be in the resource. The Creator should also be credited in this extension; I believe for taxon descriptions this is not a text string but a (member or nonmember) account profile.

Whichever term is chosen for the image extension should also be fine for the description extension. Personally I would recommend the Owner term, http://ns.adobe.com/xap/1.0/rights/Owner , as I expect this is how third party content owners lay claim to their content on Scratchpads. Another possibility is Creator, http://purl.org/dc/terms/creator

If it is desirable to credit uploaders in addition, I suggest this term: http://purl.org/dc/terms/contributor

Bug #4185 (Active): How to customize the specimens slickgrid in each taxon page?

Scratchpads issue queue - Mon, 2014-07-07 21:10

Hi. I managed to customize the slickgrid in the specimens page in my scratchpads but when I try to do the same for the specimens slickgrid in each taxon page it appears the message "access denied" (after I've clicked "edit view"). How can I solve that?

Bug #4184 (Active): Permitted values in Excel template file

Scratchpads issue queue - Mon, 2014-07-07 09:33

Hi. I've a problem when I work on the "Excel template file" for import Specimen/Observation. In particular, when I try to insert the "Taxonomic name" of a specimen, Excel give me only few options of those written in the "Permitted values" page. For example, if I have (in PermittedValues)
Buthus trinacrius
Euscorpius italicus
the programme let me insert only the first three (Buthidae, Buthus, Buthus trinacrius)! How can I solve that?

Bug #4183 (Active): Editing a Biblio record

Scratchpads issue queue - Fri, 2014-07-04 09:22

I am trying to add a publication date to a reference in the Biblio Module (the date was originally present, but may have been lost in moving from Scratchpad 1 to Scratchpad 2. I went to the record, selected Edit, added the publication date and tried to save the change. The system would not let me save, but delivered the error message "The alias is already in use'. The record is at http://weevil.info/col-opt-res-de-la-nouvelle-cal-donie-recueillis-par-me-d-planche-chirurgien-de-la-marine-imp-riale-1#overlay-context=col-opt-res-de-la-nouvelle-cal-donie-recueillis-par-me-d-planche-chirurgien-de-la-marine-imp-riale-1

A further issue with the same record is a note I had on the originalon the publication date. This is visible if the user selects the XML option on the page, but I cannot find it to edit it.


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